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Publications

2010

Probing the reproducibility of leaf growth and molecular phenotypes: a comparison of three Arabidopsis accessions cultivated in ten laboratories
Plant Physiology doi:10.1104/pp.109.148338 PubMed

Massonnet C, Vile D, Fabre J, Hannah MA, Caldana C, Lisec J, Beemster GT, Meyer RC, Messerli G, Gronlund JT, Perkovic J, Wigmore E, May S, Bevan MW, Meyer C, Rubio-Diaz S, Weigel D, Micol JL, Buchanan-Wollaston V, Fiorani F, Walsh S, Rinn B, Gruissem W, Hilson P, Hennig L, Willmitzer L, Granier C.

High-throughput sequencing for the identification of binding molecules from DNA-encoded chemical libraries
Bioorganic & Medicinal Chemistry Letters (2010) Jul 15;20(14):4188-4192, doi:10.1016/j.bmcl.2010.05.053 Epub 2010 May 20

Fabian Buller, Martina Steiner, Jörg Scheuermann, Luca Mannocci, Ina Nissen, Manuel Kohler, Christian Beisel and Dario Neri

Towards a comprehensive open source platform for management and analysis of High Content Screening data
European Pharmaceutical Review (2010) August 19, 4:34-39

Karol Kozak, Angela Bauch, Gabor Csucs, Tomasz Pylak and Bernd Rinn

2011

Data Management in Large Collaborative Biology Research Projects
it – Information Technology 53 (2011) 5 / DOI 10.1524/itit.2011.0647

Bernd Rinn

openBIS: a flexible framework for managing and analyzing complex data in biology research
BMC Bioinformatics 2011, 12:468 doi:10.1186/1471-2105-12-468

Angela Bauch, Izabela Adamczyk, Piotr Buczek, Franz-Josef Elmer, Kaloyan Enimanev, Pawel Glyzewski, Manuel Kohler, Tomasz Pylak, Andreas Quandt, Chandrasekhar Ramakrishnan, Christian Beisel, Lars Malmstrom, Ruedi Aebersold and Bernd Rinn

2012

Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism
Science 2 March 2012, Vol. 335 no. 6072 pp. 1099-1103, DOI: 10.1126/science.1206871

Joerg Martin Buescher, Wolfram Liebermeister, Matthieu Jules, Markus Uhr, Jan Muntel, Eric Botella, Bernd Hessling, Roelco Jacobus Kleijn, Ludovic Le Chat, François Lecointe, Ulrike Mäder, Pierre Nicolas, Sjouke Piersma, Frank Rügheimer, Dörte Becher, Philippe Bessieres, Elena Bidnenko, Emma L. Denham, Etienne Dervyn, Kevin M. Devine, Geoff Doherty, Samuel Drulhe, Liza Felicori, Mark J. Fogg, Anne Goelzer, Annette Hansen, Colin R. Harwood, Michael Hecker, Sebastian Hubner, Claus Hultschig, Hanne Jarmer, Edda Klipp, Aurélie Leduc, Peter Lewis, Frank Molina, Philippe Noirot, Sabine Peres, Nathalie Pigeonneau, Susanne Pohl, Simon Rasmussen, Bernd Rinn, Marc Schaffer, Julian Schnidder, Benno Schwikowski, Jan Maarten Van Dijl, Patrick Veiga, Sean Walsh, Anthony J. Wilkinson, Jörg Stelling, Stéphane Aymerich, Uwe Sauer

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis
Science 2 March 2012, Vol. 335 no. 6072 pp. 1103-1106, DOI: 10.1126/science.1206848

Pierre Nicolas, Ulrike Mäder, Etienne Dervyn, Tatiana Rochat, Aurélie Leduc, Nathalie Pigeonneau, Elena Bidnenko, Elodie Marchadier, Mark Hoebeke, Stéphane Aymerich, Dörte Becher, Paola Bisicchia, Eric Botella, Olivier Delumeau, Geoff Doherty, Emma L. Denham, Mark J. Fogg, Vincent Fromion, Anne Goelzer, Annette Hansen, Elisabeth Härtig, Colin R. Harwood, Georg Homuth, Hanne Jarmer, Matthieu Jules, Edda Klipp, Ludovic Le Chat, François Lecointe, Peter Lewis, Wolfram Liebermeister, Anika March, Ruben A. T. Mars, Priyanka Nannapaneni, David Noone, Susanne Pohl, Bernd Rinn, Frank Rügheimer, Praveen K. Sappa, Franck Samson, Marc Schaffer, Benno Schwikowski, Leif Steil, Jörg Stülke, Thomas Wiegert, Kevin M. Devine, Anthony J. Wilkinson, Jan Maarten van Dijl, Michael Hecker, Uwe Völker, Philippe Bessières, Philippe Noirot

2013

Improving the Swiss Grid Proteomics Portal: Requirements and new Features based on Experience and Usability Considerations
Proceedings of the 5th International Workshop on Science Gateways Zurich, http://ceur-ws.org/Vol-993/paper18.pdf

Peter Kunszt, Lorenz Blum, Bela Hullar, Emanuel Schmid, Adam Srebniak, Witold Wolski, Bernd Rinn, Franz-Josef Elmer, Chandrasekhar Ramakrishnan, Andreas Quandt, Lars Malmström

 

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